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JSTRING: A Novel Java Tandem Repeats Searcher in Genomic Sequences with an Interactive Graphic Output
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pp.14-17 (4) Authors: Valeria De Fonzo, Filippo Aluffi-Pentini, Valerio Parisi |
doi: 10.2174/1874136300802010014
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Abstract |
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The search of Tandem Repeats in a genomic sequence is of growing interest but unfortunately the existing tools have the drawback of producing cumbersome results that require a painstaking interpretation. In order to help users interpret the results at first glance, we implemented JSTRING that shows the results also in a very clear graphic format, thus allowing their immediate survey. The software is freely available at: http://bioinf.dms.med.uniroma1.it/JSTRING/. |
| Keywords:
Tandem repeat, genome, graphic results, applet, Java application |
| Affiliation:
Dipartimento di Medicina Sperimentale, Universita di Roma “La Sapienza”, Viale Regina Elena 324, 00161 Roma, Italy. |
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